CDS

Accession Number TCMCG006C97843
gbkey CDS
Protein Id XP_013671033.1
Location join(3823829..3823864,3823983..3824141,3824219..3824371,3824818..3824879,3825055..3825124,3826076..3826128,3826212..3826269,3826354..3826622,3826708..3826777,3826998..3827096,3827210..3827278,3827351..3827428,3827600..3827686,3827780..3827814,3827902..3828007,3828247..3828327,3828413..3828505,3828574..3828627,3828711..3828827,3828900..3828998,3829102..3829149,3829222..3829314,3832037..3832144,3832219..3832283,3832379..3832481,3832563..3832847,3832936..3833076)
Gene LOC106375621
GeneID 106375621
Organism Brassica napus

Protein

Length 896aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_013815579.2
Definition pre-mRNA-processing protein 40A isoform X5 [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category K
Description pre-mRNA-processing protein
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12821        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0005685        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006928        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007010        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008360        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010564        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016363        [VIEW IN EMBL-EBI]
GO:0016477        [VIEW IN EMBL-EBI]
GO:0016592        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016607        [VIEW IN EMBL-EBI]
GO:0022603        [VIEW IN EMBL-EBI]
GO:0022604        [VIEW IN EMBL-EBI]
GO:0030532        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032465        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034399        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0040011        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048870        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051302        [VIEW IN EMBL-EBI]
GO:0051674        [VIEW IN EMBL-EBI]
GO:0051726        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070064        [VIEW IN EMBL-EBI]
GO:0071004        [VIEW IN EMBL-EBI]
GO:0071010        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097525        [VIEW IN EMBL-EBI]
GO:0120114        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCGAACAATCCTCCTCAGTCCTCTGGTGCCCAGCAGTTTCGGGGGATGGTTCCTGGGCAACAGGGTCAGCATTTTGTTCGTGCAGCTTCACAACAGCCGTTTCATCACCCCTACGGACATATTGCATCATCATCAACACCTCCAGTTGTAGGCTTTGGTACATCTGGGCCTCCGTTTCCTTCTTCATATTCATTTACACCATCATCATCTTATGCTCCGCATATGCATGCATCTGGTAGTGTCCCACCAGCAGCCAACTCTTGGCCTGCTCCTCCTGTAACTCAAACTACAACACTTGTTTCCCCTCTTCAGCAGACACCAGCCACTCCCACTCCCACAGACCCAGGAAATCTGACTCCACAATCTGCATCTGACTGGATGGAGCATACATCTGCTGATGGTAGAAAGTATTATTATAACAAGCAGACTAAACAATCAAGTTGGGAAAAACCTCTTGAACTGATGACACCACTGGAGAGGGCAGATGCGTCCACTGTGTGGAAGGAATTTACAACAGCTGAAGGAAGGAAATATTATTATAACAAGGTTACAAAGGAGTCTAAGTGGACAATTCCGGAAGATTTAAAGTTAGCTCGGGAACAAGCCGAATTAGCTAGTGCAAAGAGGTCCCATTCCGAAGATGAATCGACCTCTCTATCCCACATTGCTGCATCCTCATCTGATCTAGCTGTAAGCACTCCTGTTACCGCTGTTGTTCCCAGTACATCTTCAACAATTCCTGCGCATTCTACAAGTCCTATTCCAGCGGGTTTGGCTGTACCTGTCATCCGTCCTCCCCCTGTTGCTTCTGTTACTCCAGTGTCTGCTGCAACCAGTGATACGGAGGCTACTGCAATGAAATTGGATAATTTACCGTCTCAGGGGGCATATGAATCAAATGATGGAGCGCCAGCACCAAATAATGAGGTTGATTATAAGGAAATTTCGGTGAATGGAAAATCCAATATGACACCTGCAGGTGACAAAGCAAACGTTGAGGAACCCATGATGTATGCTACTAAGCAGGAGGCCAAAGCTGCTTTCAAGTCTCTTTTGGAATCTGTAAATGTTCAGTCCGACTGGACATGGGAACAGACAACGAAAGTGATTGTTCATGATAAAAGATATGGTGCTTTGAGGACACTCGGTGAGCGGAAACAAGCTTTTAACGAGTATCTCGGTCAAAGGAAAAAAGTGGAAGCTGAGGAAAGGCGATGGAGACAGAAGAAAGCGCGGGAAGCACTTGTAAAGATGCTAGAGGAGTGTGAAGAATTATCATCATCCATGAAATGGAGCAAAGCTTTGAGTTTGTTTGAAAATGATGAGCGTTTTAAAGCTGTTGATCGCCCAAGGGATCGTGAAGATCTTTTTGACAATTATATTGTGGAACTTGAGAGGAAGGAAAGAGAGAAGGCAGTGGCAGAACATAGGCAGAAGATGGCAGAGTATCGGAAGTTTCTTGAAACCTGTGACTATATCAAAGCAAGTACACAATGGCGAAAAATTCAGGATAGACTGGAGGATGATGAAAGATGCTCATGTCTTGAAAAAATAGATCGTTTGATTGGTTTTGAGGATTACATTAATGACCTGGAGAAGGAGGAAGAGGAGCTGAAGAGGGTAGAGAAGGAACATGTTAGGCGGGCTGAAAGAAAAAACCGTGATGCATTTCGTACACTACTGGAAGAACATGTCGCTGCTGGCATCCTTACAGCCAAGACGTACTGGTTGGAATATTGCATTGAGGTAAGAGACTTGCCTCAATACCAAGCTGTTGCATCTAATTTGTCTGGCTCAACTCCTAAAGACTTGTTCGAAGAAATCACGGAAGAATTAGAGAAGCAGTATCACGAGGACAAGAGTCGCGTAAAGGATGCGATGAAGTCGAGGAAGGTTTCCATGGTCTCCTCATGGGTGTTTGAAGATTTTAAATCTGCTCTTTCAGAAGATCTCAGTTCTCAACCAATATCAGACATAAATTTAAAGCTCATATATAATGACTTGGTTGAGAGGATGAAGGAAAAAGAAGAAAAAGAAGCCAGAAAGCTTCAGCGTTTGGCTGAAGAGTTTACCAATCTTTTGCGCACTTTCAAGGAAATAAACGCAGCTTCAAATTGGGAAGATGTCAAACAACTAGTTGAAGAAAGTCAAGAGTACAGATCGATTGGAGATGGTAATGTTAGCAGAGGGCTTTTTGAGGAATACATAACGAGTTTACAGGAAAAAGCAAAGGAGAAGGAGCGTAAGCGTGATGAGGAAAAGAGTAGGAAAGAGAAGGATAAGGAGGAGAAAGAGAAGCGGAAGGAGAGAAGGGAAAAGGAAAGAGAACGCGAAAAAGAGAGGAGTAGCAAAAGGGAGGAATCGGAGGGTGATGTAGATGTGAGTGAAGGTCAGAAAGAGGAGAAACGAAAAGGAAAAGACCGAGACAGAAAACATAGGAGACGCCATCACAATTCTGATGATGATGTCAGTTCTGATAGGGATGACAGAGAGGAGTCGAAGAAGTGGTCATCATCCCGTAAACATGATCGCAAAAAATCAAGAAAGCACGCAAACACGCCAGAATCAGACAGTGAAAATCGGCATAAAAGACAGAAGAAAGAGCAGCGTGAGAGTAGTCGTCGAGGTGGTGGTAATGACGAGTTAGAGGATGGAGAGGTTGGGGAAGATGGTGAAATCAGACTTTAA
Protein:  
MSNNPPQSSGAQQFRGMVPGQQGQHFVRAASQQPFHHPYGHIASSSTPPVVGFGTSGPPFPSSYSFTPSSSYAPHMHASGSVPPAANSWPAPPVTQTTTLVSPLQQTPATPTPTDPGNLTPQSASDWMEHTSADGRKYYYNKQTKQSSWEKPLELMTPLERADASTVWKEFTTAEGRKYYYNKVTKESKWTIPEDLKLAREQAELASAKRSHSEDESTSLSHIAASSSDLAVSTPVTAVVPSTSSTIPAHSTSPIPAGLAVPVIRPPPVASVTPVSAATSDTEATAMKLDNLPSQGAYESNDGAPAPNNEVDYKEISVNGKSNMTPAGDKANVEEPMMYATKQEAKAAFKSLLESVNVQSDWTWEQTTKVIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRWRQKKAREALVKMLEECEELSSSMKWSKALSLFENDERFKAVDRPRDREDLFDNYIVELERKEREKAVAEHRQKMAEYRKFLETCDYIKASTQWRKIQDRLEDDERCSCLEKIDRLIGFEDYINDLEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLEYCIEVRDLPQYQAVASNLSGSTPKDLFEEITEELEKQYHEDKSRVKDAMKSRKVSMVSSWVFEDFKSALSEDLSSQPISDINLKLIYNDLVERMKEKEEKEARKLQRLAEEFTNLLRTFKEINAASNWEDVKQLVEESQEYRSIGDGNVSRGLFEEYITSLQEKAKEKERKRDEEKSRKEKDKEEKEKRKERREKEREREKERSSKREESEGDVDVSEGQKEEKRKGKDRDRKHRRRHHNSDDDVSSDRDDREESKKWSSSRKHDRKKSRKHANTPESDSENRHKRQKKEQRESSRRGGGNDELEDGEVGEDGEIRL